Syllabus

Historical Perspective section_01

Syllabus
Historical Perspective: Discovery of microbial world; Landmark discoveries relevant to the field of microbiology; Controversy over spontaneous generation; Role of microorganisms in transformation of organic matter and in the causation of diseases.
Core concepts (5)
  • Discovery of the microbial world
  • Landmark discoveries in microbiology
  • Spontaneous generation controversy
  • Microorganisms in transformation of organic matter
  • Microorganisms in causation of diseases
Related concepts (6)
  • Development of microscopy and staining
  • Germ theory vs miasma theory
  • Sterilization, disinfection, and aseptic technique
  • Fermentation and industrial microbiology origins
  • Epidemiology and public health milestones
  • Concept of microbial ubiquity

Methods in Microbiology section_02

Syllabus
Methods in Microbiology: Pure culture techniques; Principles of microbial nutrition; Enrichment culture techniques for isolation of microorganisms; antigen and antibody detection methods for microbial diagnosis; Light-, phase contrast-, fluorescence- and electron-microscopy; PCR, real-time PCR for quantitation of microbes; Next generation sequencing technologies in microbiology.
Core concepts (7)
  • Pure culture techniques
  • Principles of microbial nutrition
  • Enrichment culture techniques
  • Antigen and antibody detection for diagnosis
  • Light, phase contrast, fluorescence, and electron microscopy
  • PCR and real-time PCR for quantitation
  • Next-generation sequencing technologies
Related concepts (8)
  • Aseptic technique and contamination control
  • Culture media types
  • Quantitative microbial growth concepts
  • Immunological specificity and cross-reactivity
  • Microscopy sample preparation
  • Nucleic acid extraction and quality control
  • Bioinformatics fundamentals for sequencing
  • Diagnostic test performance

Microbial Taxonomy and Diversity section_03

Syllabus
Microbial Taxonomy and Diversity: Bacteria, Archaea and their broad classification; Eukaryotic microbes: yeasts, molds and protozoa; Viruses and their classification; Molecular approaches to microbial taxonomy and phylogeny.
Core concepts (5)
  • Bacteria broad classification
  • Archaea broad classification
  • Eukaryotic microbial diversity
  • Viral diversity and classification
  • Molecular taxonomy and phylogeny
Related concepts (8)
  • Species concept and operational taxonomy
  • Taxonomic ranks and nomenclature
  • Prokaryotic vs eukaryotic cell organization
  • Phenotypic and chemotaxonomic markers
  • Horizontal gene transfer and genome plasticity
  • Molecular markers and genomic similarity metrics
  • Phylogenetic methods basics
  • Viral replication strategies (Baltimore framework linkage)

Prokaryotic Cells: Structure and Function section_04

Syllabus
Prokaryotic Cells: Structure and Function: Cell walls, cell membranes and their biosynthesis, mechanisms of solute transport across membranes, flagella and pili, capsules, cell inclusions like endospores and gas vesicles; bacterial locomotion, including positive and negative chemotaxis.
Core concepts (10)
  • Prokaryotic cell wall structure
  • Cell wall biosynthesis
  • Prokaryotic cell membrane structure
  • Cell membrane biosynthesis
  • Solute transport across membranes
  • Flagella
  • Pili (fimbriae)
  • Capsules
  • Cell inclusions- endospores and gas vesicles
  • Bacterial locomotion and chemotaxis
Related concepts (8)
  • Gram-positive vs Gram-negative envelope differences
  • Outer membrane components and porins
  • S-layer and archaeal cell wall variants
  • Membrane energetics
  • Two-component signaling systems
  • Biofilms and extracellular polymeric substances
  • Antibiotic targets in wall/membrane synthesis
  • Methods to study structure and motility

Microbial Growth section_05

Syllabus
Microbial Growth: Definition of growth; Growth curve; Mathematical expression of exponential growth phase; Measurement of growth and growth yields; Synchronous growth; Continuous culture; Effect of environmental factors on growth; Bacterial biofilm and biofouling.
Core concepts (8)
  • Definition of microbial growth
  • Microbial growth curve
  • Exponential growth mathematics
  • Measurement of growth and growth yields
  • Synchronous growth
  • Continuous culture
  • Environmental effects on growth
  • Biofilms and biofouling
Related concepts (8)
  • Growth rate parameters and units
  • Monod growth kinetics (conceptual linkage)
  • Viable vs total counts
  • Calibration and standard curves
  • Maintenance energy and stationary phase physiology
  • Quorum sensing and regulation in biofilms
  • Mass transfer limits in biofilms
  • Control strategies for biofouling

Control of Micro-organisms section_06

Syllabus
Control of Micro-organisms: Disinfection and Sterilization—principles, methods and assessment of efficacy.
Core concepts (4)
  • Principles of disinfection and sterilization
  • Physical methods of sterilization
  • Chemical disinfection and chemical sterilants
  • Assessment of efficacy (validation and monitoring)
Related concepts (8)
  • Terminology and levels of control
  • Microbial resistance determinants
  • Kinetics of microbial death
  • D-value and Z-value concepts
  • Sterility assurance level (SAL)
  • Cleaning and bioburden reduction
  • Packaging, loading, and penetration
  • Indicators and controls

Microbial Metabolism section_07

Syllabus
Microbial Metabolism: Energetics (redox reactions and electron carriers); Electron transport and oxidative phosphorylation; An overview of metabolism; Glycolysis; Pentose-phosphate pathway; Entner-Doudoroff pathway; Glyoxalate pathway; The citric acid cycle; Fermentation; Aerobic and anaerobic respiration; Chemolithotrophy; Photosynthesis; Calvin cycle; Biosynthetic pathway for fatty acids synthesis; Common regulatory mechanisms in synthesis of amino acids; Regulation of major metabolic pathways.
Core concepts (18)
  • Bioenergetics and redox
  • Electron carriers
  • Electron transport chain and oxidative phosphorylation
  • Metabolic organization overview
  • Glycolysis (EMP pathway)
  • Pentose phosphate pathway (PPP)
  • Entner–Doudoroff (ED) pathway
  • Glyoxylate pathway (shunt)
  • Citric acid cycle (TCA)
  • Fermentation
  • Aerobic respiration
  • Anaerobic respiration
  • Chemolithotrophy
  • Photosynthesis in microbes
  • Calvin cycle
  • Fatty acid biosynthesis
  • Regulation of amino acid biosynthesis
  • Regulation of major metabolic pathways
Related concepts (10)
  • Thermodynamic vs kinetic control
  • Proton motive force components
  • Substrate-level phosphorylation
  • Redox balancing logic
  • Anaplerotic reactions
  • Alternative central carbon routes
  • Terminal oxidases and nitrate reductases (conceptual)
  • Phototrophic electron donors and acceptors
  • Metabolic flux and regulation perspective
  • Experimental readouts in metabolism

Microbial Diseases and Host Pathogen Interaction section_08

Syllabus
Microbial Diseases and Host–Pathogen Interaction: Normal microbiota; classification of infectious diseases; reservoirs of infection; nosocomial infection; opportunistic infections; emerging infectious diseases; mechanism of microbial pathogenicity; nonspecific defense of host; antigens and antibodies; humoral and cell mediated immunity; vaccines; passive immunization; immune deficiency; human diseases caused by viruses, bacteria, and pathogenic fungi.
Core concepts (15)
  • Normal microbiota
  • Classification of infectious diseases
  • Reservoirs and transmission of infection
  • Nosocomial (healthcare-associated) infections
  • Opportunistic infections
  • Emerging infectious diseases
  • Mechanisms of microbial pathogenicity
  • Innate (nonspecific) host defenses
  • Antigens and antibodies
  • Humoral immunity
  • Cell-mediated immunity
  • Vaccines
  • Passive immunization
  • Immune deficiency
  • Human diseases caused by viruses, bacteria, and pathogenic fungi
Related concepts (10)
  • Colonization resistance and dysbiosis
  • Infection vs disease vs colonization
  • Epidemiologic measures and outbreak basics
  • Virulence factors and pathogenicity islands
  • Biofilms in infection
  • Antigen presentation and MHC concept
  • Hypersensitivity and immunopathology
  • Vaccination strategies
  • Diagnostic immunology linkages
  • Antimicrobial resistance as an emergence driver

Chemotherapy/Antibiotics section_09

Syllabus
Chemotherapy/Antibiotics: General characteristics of antimicrobial drugs; Antibiotics—classification, molecular mechanism of mode of action and resistance; Antifungal and antiviral drugs.
Core concepts (6)
  • General characteristics of antimicrobial drugs
  • Antibiotic classification
  • Molecular mechanisms of antibacterial action
  • Molecular mechanisms of antibacterial resistance
  • Antifungal drugs
  • Antiviral drugs
Related concepts (8)
  • Pharmacodynamic principles (conceptual)
  • MIC, MBC, and susceptibility testing logic
  • Combination therapy and synergy/antagonism
  • Intrinsic vs acquired resistance
  • Horizontal gene transfer in AMR
  • Tolerance and persistence vs resistance
  • Antibiotic stewardship concepts
  • Fungal and viral biology constraints

Microbial Genetics section_10

Syllabus
Microbial Genetics: Types of mutation; UV and chemical mutagens; Selection of mutants; Ames test for mutagenesis; Bacterial genetic system: transformation, conjugation, transduction, recombination, plasmids, transposons; DNA repair; Regulation of gene expression: repression and induction; Operon model; Bacterial genome with special reference to E. coli; Phage \u03bb and its life cycle; RNA; mutation in virus genomes, virus recombination and reassortment; Basic concept of microbial genomics.
Core concepts (18)
  • Types of mutation
  • UV and chemical mutagens
  • Selection of mutants
  • Ames test for mutagenesis
  • Bacterial transformation
  • Bacterial conjugation
  • Bacterial transduction
  • Recombination in bacteria
  • Plasmids
  • Transposons
  • DNA repair
  • Regulation of gene expression- repression and induction
  • Operon model
  • Bacterial genome with special reference to E. coli
  • Phage lambda (\\u03bb) and its life cycle
  • RNA in microbial genetics
  • Viral genome mutation, recombination, and reassortment
  • Basic concepts of microbial genomics
Related concepts (8)
  • Genotype to phenotype mapping
  • Mutational load and DNA damage tolerance
  • Gene mapping logic in bacteria
  • Restriction-modification and CRISPR (context for gene transfer)
  • Plasmid biology in AMR spread
  • Regulatory networks beyond operons
  • Mobile genetic elements in genome evolution
  • Differences between bacterial and viral genetics

Microbial Ecology section_11

Syllabus
Microbial Ecology: Microbial interactions; Carbon, sulphur and nitrogen cycles; Soil microorganisms associated with vascular plants; Bioremediation; Uncultivable microorganisms; basic concept of metagenomics and metatranscriptomics.
Core concepts (8)
  • Microbial interactions
  • Carbon cycle (microbial roles)
  • Nitrogen cycle (microbial roles)
  • Sulphur cycle (microbial roles)
  • Soil microorganisms associated with vascular plants
  • Bioremediation
  • Uncultivable microorganisms
  • Metagenomics and metatranscriptomics
Related concepts (8)
  • Community structure and diversity metrics
  • Microbial niches and microenvironments
  • Biofilms in ecology
  • Syntrophy and interspecies electron transfer
  • Biogeochemical coupling and redox ladders
  • Methods to link taxa to function
  • Sampling and experimental design in ecology
  • Data interpretation pitfalls in meta-omics