Syllabus
Topics
Historical Perspective section_01
Syllabus
Historical Perspective: Discovery of microbial world; Landmark discoveries relevant to the field of microbiology; Controversy over spontaneous generation; Role of microorganisms in transformation of organic matter and in the causation of diseases.
Core concepts (5)
- Discovery of the microbial world
- Landmark discoveries in microbiology
- Spontaneous generation controversy
- Microorganisms in transformation of organic matter
- Microorganisms in causation of diseases
Related concepts (6)
- Development of microscopy and staining
- Germ theory vs miasma theory
- Sterilization, disinfection, and aseptic technique
- Fermentation and industrial microbiology origins
- Epidemiology and public health milestones
- Concept of microbial ubiquity
Methods in Microbiology section_02
Syllabus
Methods in Microbiology: Pure culture techniques; Principles of microbial nutrition; Enrichment culture techniques for isolation of microorganisms; antigen and antibody detection methods for microbial diagnosis; Light-, phase contrast-, fluorescence- and electron-microscopy; PCR, real-time PCR for quantitation of microbes; Next generation sequencing technologies in microbiology.
Core concepts (7)
- Pure culture techniques
- Principles of microbial nutrition
- Enrichment culture techniques
- Antigen and antibody detection for diagnosis
- Light, phase contrast, fluorescence, and electron microscopy
- PCR and real-time PCR for quantitation
- Next-generation sequencing technologies
Related concepts (8)
- Aseptic technique and contamination control
- Culture media types
- Quantitative microbial growth concepts
- Immunological specificity and cross-reactivity
- Microscopy sample preparation
- Nucleic acid extraction and quality control
- Bioinformatics fundamentals for sequencing
- Diagnostic test performance
Microbial Taxonomy and Diversity section_03
Syllabus
Microbial Taxonomy and Diversity: Bacteria, Archaea and their broad classification; Eukaryotic microbes: yeasts, molds and protozoa; Viruses and their classification; Molecular approaches to microbial taxonomy and phylogeny.
Core concepts (5)
- Bacteria broad classification
- Archaea broad classification
- Eukaryotic microbial diversity
- Viral diversity and classification
- Molecular taxonomy and phylogeny
Related concepts (8)
- Species concept and operational taxonomy
- Taxonomic ranks and nomenclature
- Prokaryotic vs eukaryotic cell organization
- Phenotypic and chemotaxonomic markers
- Horizontal gene transfer and genome plasticity
- Molecular markers and genomic similarity metrics
- Phylogenetic methods basics
- Viral replication strategies (Baltimore framework linkage)
Prokaryotic Cells: Structure and Function section_04
Syllabus
Prokaryotic Cells: Structure and Function: Cell walls, cell membranes and their biosynthesis, mechanisms of solute transport across membranes, flagella and pili, capsules, cell inclusions like endospores and gas vesicles; bacterial locomotion, including positive and negative chemotaxis.
Core concepts (10)
- Prokaryotic cell wall structure
- Cell wall biosynthesis
- Prokaryotic cell membrane structure
- Cell membrane biosynthesis
- Solute transport across membranes
- Flagella
- Pili (fimbriae)
- Capsules
- Cell inclusions- endospores and gas vesicles
- Bacterial locomotion and chemotaxis
Related concepts (8)
- Gram-positive vs Gram-negative envelope differences
- Outer membrane components and porins
- S-layer and archaeal cell wall variants
- Membrane energetics
- Two-component signaling systems
- Biofilms and extracellular polymeric substances
- Antibiotic targets in wall/membrane synthesis
- Methods to study structure and motility
Microbial Growth section_05
Syllabus
Microbial Growth: Definition of growth; Growth curve; Mathematical expression of exponential growth phase; Measurement of growth and growth yields; Synchronous growth; Continuous culture; Effect of environmental factors on growth; Bacterial biofilm and biofouling.
Core concepts (8)
- Definition of microbial growth
- Microbial growth curve
- Exponential growth mathematics
- Measurement of growth and growth yields
- Synchronous growth
- Continuous culture
- Environmental effects on growth
- Biofilms and biofouling
Related concepts (8)
- Growth rate parameters and units
- Monod growth kinetics (conceptual linkage)
- Viable vs total counts
- Calibration and standard curves
- Maintenance energy and stationary phase physiology
- Quorum sensing and regulation in biofilms
- Mass transfer limits in biofilms
- Control strategies for biofouling
Control of Micro-organisms section_06
Syllabus
Control of Micro-organisms: Disinfection and Sterilization—principles, methods and assessment of efficacy.
Core concepts (4)
- Principles of disinfection and sterilization
- Physical methods of sterilization
- Chemical disinfection and chemical sterilants
- Assessment of efficacy (validation and monitoring)
Related concepts (8)
- Terminology and levels of control
- Microbial resistance determinants
- Kinetics of microbial death
- D-value and Z-value concepts
- Sterility assurance level (SAL)
- Cleaning and bioburden reduction
- Packaging, loading, and penetration
- Indicators and controls
Microbial Metabolism section_07
Syllabus
Microbial Metabolism: Energetics (redox reactions and electron carriers); Electron transport and oxidative phosphorylation; An overview of metabolism; Glycolysis; Pentose-phosphate pathway; Entner-Doudoroff pathway; Glyoxalate pathway; The citric acid cycle; Fermentation; Aerobic and anaerobic respiration; Chemolithotrophy; Photosynthesis; Calvin cycle; Biosynthetic pathway for fatty acids synthesis; Common regulatory mechanisms in synthesis of amino acids; Regulation of major metabolic pathways.
Core concepts (18)
- Bioenergetics and redox
- Electron carriers
- Electron transport chain and oxidative phosphorylation
- Metabolic organization overview
- Glycolysis (EMP pathway)
- Pentose phosphate pathway (PPP)
- Entner–Doudoroff (ED) pathway
- Glyoxylate pathway (shunt)
- Citric acid cycle (TCA)
- Fermentation
- Aerobic respiration
- Anaerobic respiration
- Chemolithotrophy
- Photosynthesis in microbes
- Calvin cycle
- Fatty acid biosynthesis
- Regulation of amino acid biosynthesis
- Regulation of major metabolic pathways
Related concepts (10)
- Thermodynamic vs kinetic control
- Proton motive force components
- Substrate-level phosphorylation
- Redox balancing logic
- Anaplerotic reactions
- Alternative central carbon routes
- Terminal oxidases and nitrate reductases (conceptual)
- Phototrophic electron donors and acceptors
- Metabolic flux and regulation perspective
- Experimental readouts in metabolism
Microbial Diseases and Host Pathogen Interaction section_08
Syllabus
Microbial Diseases and Host–Pathogen Interaction: Normal microbiota; classification of infectious diseases; reservoirs of infection; nosocomial infection; opportunistic infections; emerging infectious diseases; mechanism of microbial pathogenicity; nonspecific defense of host; antigens and antibodies; humoral and cell mediated immunity; vaccines; passive immunization; immune deficiency; human diseases caused by viruses, bacteria, and pathogenic fungi.
Core concepts (15)
- Normal microbiota
- Classification of infectious diseases
- Reservoirs and transmission of infection
- Nosocomial (healthcare-associated) infections
- Opportunistic infections
- Emerging infectious diseases
- Mechanisms of microbial pathogenicity
- Innate (nonspecific) host defenses
- Antigens and antibodies
- Humoral immunity
- Cell-mediated immunity
- Vaccines
- Passive immunization
- Immune deficiency
- Human diseases caused by viruses, bacteria, and pathogenic fungi
Related concepts (10)
- Colonization resistance and dysbiosis
- Infection vs disease vs colonization
- Epidemiologic measures and outbreak basics
- Virulence factors and pathogenicity islands
- Biofilms in infection
- Antigen presentation and MHC concept
- Hypersensitivity and immunopathology
- Vaccination strategies
- Diagnostic immunology linkages
- Antimicrobial resistance as an emergence driver
Chemotherapy/Antibiotics section_09
Syllabus
Chemotherapy/Antibiotics: General characteristics of antimicrobial drugs; Antibiotics—classification, molecular mechanism of mode of action and resistance; Antifungal and antiviral drugs.
Core concepts (6)
- General characteristics of antimicrobial drugs
- Antibiotic classification
- Molecular mechanisms of antibacterial action
- Molecular mechanisms of antibacterial resistance
- Antifungal drugs
- Antiviral drugs
Related concepts (8)
- Pharmacodynamic principles (conceptual)
- MIC, MBC, and susceptibility testing logic
- Combination therapy and synergy/antagonism
- Intrinsic vs acquired resistance
- Horizontal gene transfer in AMR
- Tolerance and persistence vs resistance
- Antibiotic stewardship concepts
- Fungal and viral biology constraints
Microbial Genetics section_10
Syllabus
Microbial Genetics: Types of mutation; UV and chemical mutagens; Selection of mutants; Ames test for mutagenesis; Bacterial genetic system: transformation, conjugation, transduction, recombination, plasmids, transposons; DNA repair; Regulation of gene expression: repression and induction; Operon model; Bacterial genome with special reference to E. coli; Phage \u03bb and its life cycle; RNA; mutation in virus genomes, virus recombination and reassortment; Basic concept of microbial genomics.
Core concepts (18)
- Types of mutation
- UV and chemical mutagens
- Selection of mutants
- Ames test for mutagenesis
- Bacterial transformation
- Bacterial conjugation
- Bacterial transduction
- Recombination in bacteria
- Plasmids
- Transposons
- DNA repair
- Regulation of gene expression- repression and induction
- Operon model
- Bacterial genome with special reference to E. coli
- Phage lambda (\\u03bb) and its life cycle
- RNA in microbial genetics
- Viral genome mutation, recombination, and reassortment
- Basic concepts of microbial genomics
Related concepts (8)
- Genotype to phenotype mapping
- Mutational load and DNA damage tolerance
- Gene mapping logic in bacteria
- Restriction-modification and CRISPR (context for gene transfer)
- Plasmid biology in AMR spread
- Regulatory networks beyond operons
- Mobile genetic elements in genome evolution
- Differences between bacterial and viral genetics
Microbial Ecology section_11
Syllabus
Microbial Ecology: Microbial interactions; Carbon, sulphur and nitrogen cycles; Soil microorganisms associated with vascular plants; Bioremediation; Uncultivable microorganisms; basic concept of metagenomics and metatranscriptomics.
Core concepts (8)
- Microbial interactions
- Carbon cycle (microbial roles)
- Nitrogen cycle (microbial roles)
- Sulphur cycle (microbial roles)
- Soil microorganisms associated with vascular plants
- Bioremediation
- Uncultivable microorganisms
- Metagenomics and metatranscriptomics
Related concepts (8)
- Community structure and diversity metrics
- Microbial niches and microenvironments
- Biofilms in ecology
- Syntrophy and interspecies electron transfer
- Biogeochemical coupling and redox ladders
- Methods to link taxa to function
- Sampling and experimental design in ecology
- Data interpretation pitfalls in meta-omics